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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
APOA1 is prognostic, high expression is favourable in liver cancer
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
: Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A 5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A 5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as median FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
4515.8
Number of samples
365
Samples
Sample
Description
FPKM
TCGA-BD-A2L6-01A
69 years, male, white, alive, 1363 days
28635.8
TCGA-DD-AADS-01A
63 years, male, asian, stage:i, alive, 474 days
27130.8
TCGA-G3-AAV0-01A
58 years, male, asian, stage:i, alive, 476 days
24680.1
TCGA-CC-5259-01A
60 years, female, asian, stage:iiic, alive, 250 days
22257.3
TCGA-G3-A7M5-01A
76 years, male, asian, stage:i, alive, 447 days
20997.0
TCGA-2Y-A9H1-01A
58 years, male, white, stage:i, dead, 1229 days
18355.1
TCGA-ES-A2HS-01A
80 years, male, white, stage:i, dead, 688 days
18079.7
TCGA-2Y-A9H7-01A
81 years, female, white, stage:i, alive, 1168 days
17872.6
TCGA-RC-A7S9-01A
47 years, female, asian, stage:i, alive, 640 days
16054.0
TCGA-DD-AACC-01A
61 years, male, asian, stage:i, dead, 1685 days
15560.3
TCGA-2Y-A9H5-01A
59 years, female, white, stage:i, dead, 555 days
14906.9
TCGA-DD-AADJ-01A
70 years, female, asian, stage:i, alive, 1066 days
14115.2
TCGA-DD-AADN-01A
59 years, male, asian, stage:i, alive, 898 days
14089.9
TCGA-DD-A3A2-01A
76 years, female, white, stage:i, dead, 2131 days
13053.2
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:ii, alive, 6 days
12872.5
TCGA-FV-A495-01A
51 years, female, white, stage:ii, alive, 1 days
12815.5
TCGA-2Y-A9H3-01A
45 years, male, white, stage:ii, alive, 1516 days
12734.6
TCGA-ZS-A9CE-01A
79 years, female, white, stage:ii, alive, 1241 days
12448.8
TCGA-DD-AADM-01A
58 years, male, asian, stage:ii, dead, 12 days
12404.3
TCGA-ED-A8O5-01A
59 years, female, asian, stage:iiia, alive, 406 days
12325.6
TCGA-G3-AAUZ-01A
48 years, male, stage:i, alive, 480 days
12224.9
TCGA-DD-AADF-01A
64 years, female, asian, stage:i, dead, 115 days
11759.0
TCGA-DD-AACD-01A
48 years, male, asian, stage:i, dead, 381 days
11601.5
TCGA-K7-A5RF-01A
64 years, male, white, stage:i, alive, 631 days
11427.7
TCGA-DD-A39Z-01A
43 years, female, stage:ii, dead, 601 days
11392.3
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:i, alive, 2728 days
11098.6
TCGA-CC-A123-01A
24 years, female, asian, stage:iiia, alive, 219 days
10953.7
TCGA-DD-AAE7-01A
72 years, male, asian, stage:i, alive, 644 days
10927.5
TCGA-DD-A73G-01A
73 years, female, white, stage:i, alive, 3478 days
10776.8
TCGA-CC-A7IF-01A
59 years, male, asian, stage:iiia, dead, 649 days
10737.9
TCGA-G3-AAV6-01A
53 years, female, white, stage:iiia, dead, 65 days
10695.6
TCGA-DD-AADO-01A
55 years, male, asian, stage:i, alive, 453 days
10505.6
TCGA-CC-A8HS-01A
18 years, male, asian, stage:iiic, dead, 300 days
10447.1
TCGA-ED-A66Y-01A
51 years, female, asian, stage:iiia, dead, 296 days
10376.4
TCGA-FV-A496-01A
84 years, female, white, stage:i, alive, 10 days
10222.5
TCGA-DD-A119-01A
40 years, male, asian, stage:iv, dead, 223 days
9943.8
TCGA-DD-A3A1-01A
65 years, male, stage:iiia, dead, 233 days
9935.8
TCGA-DD-AACW-01A
43 years, male, asian, stage:i, alive, 1424 days
9723.6
TCGA-2Y-A9H0-01A
49 years, male, white, stage:iiia, alive, 3675 days
9454.5
TCGA-ED-A7PY-01A
20 years, female, asian, stage:ii, alive, 390 days
9443.9
TCGA-DD-AADA-01A
66 years, female, asian, stage:i, alive, 1233 days
9397.8
TCGA-DD-AACG-01A
52 years, male, asian, stage:ii, dead, 469 days
9396.0
TCGA-DD-AAEA-01A
65 years, male, asian, stage:i, alive, 575 days
9113.7
TCGA-DD-AAD3-01A
43 years, male, asian, stage:i, alive, 1295 days
8934.1
TCGA-DD-A4NV-01A
61 years, male, white, stage:iiia, alive, 2398 days
8824.3
TCGA-MI-A75G-01A
63 years, male, white, stage:ii, alive, 698 days
8757.9
TCGA-G3-A3CH-01A
53 years, male, asian, stage:iiia, alive, 780 days
8703.3
TCGA-RC-A7SF-01A
66 years, male, asian, stage:i, alive, 579 days
8531.7
TCGA-UB-A7ME-01A
51 years, male, asian, stage:i, alive, 486 days
8509.4
TCGA-DD-AADK-01A
68 years, female, asian, stage:ii, alive, 1049 days
8474.8
TCGA-BC-A110-01A
51 years, female, black or african american, dead, 2116 days
8463.2
TCGA-DD-AADR-01A
58 years, male, asian, stage:i, alive, 2028 days
8425.5
TCGA-DD-AACF-01A
68 years, male, asian, stage:i, dead, 365 days
8359.6
TCGA-5C-A9VH-01A
70 years, male, white, stage:i, alive, 322 days
8312.9
TCGA-DD-A73A-01A
71 years, male, white, stage:i, alive, 728 days
8201.5
TCGA-DD-A3A5-01A
66 years, female, white, stage:iii, dead, 3125 days
8159.8
TCGA-UB-AA0V-01A
69 years, female, white, stage:i, alive, 314 days
8152.5
TCGA-WX-AA46-01A
62 years, male, white, stage:ii, alive, 756 days
8022.1
TCGA-NI-A8LF-01A
74 years, male, white, stage:i, alive, 799 days
7865.1
TCGA-DD-A4NN-01A
56 years, female, white, stage:i, dead, 899 days
7821.3
TCGA-DD-A1EJ-01A
71 years, female, white, stage:iiic, dead, 1005 days
7717.8
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:ii, alive, 94 days
7697.5
TCGA-2Y-A9H8-01A
85 years, female, white, dead, 633 days
7696.7
TCGA-DD-A1EH-01A
23 years, male, white, stage:iii, alive, 1495 days
7687.9
TCGA-FV-A4ZP-01A
78 years, male, white, stage:iiia, dead, 2486 days
7680.8
TCGA-BC-A10X-01A
52 years, female, white, stage:iiia, dead, 770 days
7670.2
TCGA-5R-AAAM-01A
65 years, female, white, stage:ii, dead, 46 days
7656.8
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:i, alive, 1452 days
7565.4
TCGA-DD-AAD1-01A
51 years, female, asian, stage:i, alive, 564 days
7550.3
TCGA-DD-AAVU-01A
46 years, male, asian, stage:ii, alive, 2202 days
7427.1
TCGA-DD-AADV-01A
50 years, male, asian, stage:i, alive, 574 days
7372.6
TCGA-DD-AAE1-01A
52 years, male, asian, stage:i, alive, 552 days
7366.1
TCGA-RC-A7SH-01A
42 years, male, asian, stage:ii, alive, 468 days
7325.4
TCGA-DD-A118-01A
77 years, female, white, stage:ii, alive, 3437 days
7315.7
TCGA-DD-AAW0-01A
54 years, male, asian, stage:i, alive, 2015 days
7253.2
TCGA-DD-AACN-01A
32 years, male, asian, stage:i, alive, 1302 days
7116.2
TCGA-HP-A5N0-01A
88 years, female, dead, 1147 days
7088.6
TCGA-LG-A9QD-01A
68 years, male, white, stage:iiia, alive, 366 days
7043.9
TCGA-DD-AAEH-01A
73 years, male, asian, stage:i, alive, 784 days
6957.0
TCGA-DD-AAEI-01A
72 years, male, asian, stage:i, alive, 1531 days
6793.4
TCGA-G3-A7M7-01A
65 years, male, white, stage:i, alive, 361 days
6778.8
TCGA-G3-A25Z-01A
58 years, male, asian, stage:i, alive, 655 days
6767.1
TCGA-DD-AAE0-01A
45 years, female, asian, stage:iiia, alive, 555 days
6598.0
TCGA-KR-A7K2-01A
64 years, male, white, stage:i, alive, 829 days
6553.0
TCGA-DD-AACO-01A
40 years, male, asian, stage:i, alive, 1876 days
6534.3
TCGA-ED-A7XO-01A
29 years, male, asian, stage:iiia, alive, 427 days
6510.8
TCGA-EP-A2KB-01A
46 years, female, white, stage:i, dead, 596 days
6495.4
TCGA-K7-A6G5-01A
66 years, male, white, stage:i, alive, 512 days
6490.2
TCGA-2Y-A9GV-01A
54 years, female, white, stage:i, dead, 2532 days
6458.0
TCGA-CC-A7IE-01A
57 years, male, asian, stage:iiia, dead, 217 days
6448.0
TCGA-DD-AAE4-01A
49 years, female, asian, stage:i, alive, 608 days
6444.0
TCGA-DD-A1EI-01A
46 years, male, asian, stage:i, alive, 183 days
6313.0
TCGA-DD-A73C-01A
65 years, female, white, stage:iiia, alive, 701 days
6306.9
TCGA-DD-A11D-01A
57 years, female, white, stage:i, dead, 1560 days
6230.1
TCGA-CC-A5UC-01A
63 years, male, asian, stage:iiia, dead, 347 days
6159.5
TCGA-2Y-A9GU-01A
55 years, female, white, stage:i, alive, 1939 days
6133.2
TCGA-DD-AAVW-01A
35 years, male, asian, stage:i, alive, 2317 days
5846.4
TCGA-ZP-A9CY-01A
66 years, female, white, alive, 782 days
5822.3
TCGA-DD-AADI-01A
43 years, female, asian, stage:i, alive, 1085 days
5809.7
TCGA-DD-AADB-01A
51 years, male, asian, stage:i, alive, 1242 days
5780.5
TCGA-BC-A10S-01A
81 years, male, white, dead, 1423 days
5774.9
TCGA-GJ-A3OU-01A
59 years, male, white, stage:i, alive, 879 days
5760.7
TCGA-DD-AAED-01A
51 years, male, asian, stage:i, alive, 763 days
5746.4
TCGA-DD-AACE-01A
62 years, male, asian, stage:i, alive, 2184 days
5649.1
TCGA-2Y-A9H6-01A
68 years, female, white, stage:i, alive, 357 days
5636.8
TCGA-MI-A75E-01A
61 years, male, white, stage:iiic, alive, 507 days
5618.7
TCGA-CC-A9FS-01A
55 years, male, asian, stage:ii, alive, 211 days
5486.1
TCGA-DD-AACI-01A
69 years, male, asian, stage:ii, alive, 1618 days
5446.8
TCGA-ED-A459-01A
47 years, male, asian, stage:ii, alive, 910 days
5440.4
TCGA-RC-A7SB-01A
53 years, male, asian, stage:ii, alive, 588 days
5440.1
TCGA-WJ-A86L-01A
68 years, female, white, stage:i, alive, 345 days
5386.4
TCGA-G3-A25V-01A
68 years, male, white, stage:i, alive, 860 days
5381.0
TCGA-DD-AACJ-01A
75 years, male, asian, stage:ii, alive, 2102 days
5352.2
TCGA-XR-A8TF-01A
74 years, male, white, stage:i, dead, 693 days
5292.4
TCGA-DD-AACU-01A
59 years, male, asian, stage:i, alive, 1567 days
5275.4
TCGA-DD-A11C-01A
69 years, male, white, stage:i, alive, 662 days
5215.5
TCGA-DD-AADW-01A
48 years, male, asian, stage:i, alive, 587 days
5158.8
TCGA-DD-A3A7-01A
67 years, male, stage:iiib, dead, 419 days
5129.0
TCGA-BC-A69I-01A
69 years, male, white, stage:i, alive, 387 days
5088.6
TCGA-DD-AAEB-01A
60 years, male, asian, stage:i, alive, 478 days
5075.1
TCGA-G3-AAV4-01A
83 years, female, white, stage:i, dead, 27 days
5015.7
TCGA-DD-AACK-01A
70 years, male, asian, stage:i, alive, 9 days
5000.6
TCGA-DD-A3A3-01A
45 years, male, asian, stage:i, dead, 535 days
4942.2
TCGA-ED-A66X-01A
35 years, male, asian, stage:iiia, alive, 406 days
4883.1
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:iiib, alive, 396 days
4812.8
TCGA-UB-AA0U-01A
60 years, male, white, stage:ii, alive, 327 days
4807.8
TCGA-DD-AADD-01A
51 years, male, asian, stage:i, alive, 1231 days
4761.6
TCGA-DD-A4NK-01A
80 years, female, white, stage:iiia, dead, 1210 days
4740.1
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:i, alive, 1900 days
4736.8
TCGA-ED-A4XI-01A
58 years, male, asian, stage:ii, alive, 819 days
4735.0
TCGA-DD-A116-01A
68 years, male, asian, stage:iiia, dead, 1622 days
4734.0
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:ii, dead, 848 days
4657.2
TCGA-DD-AADG-01A
70 years, male, asian, stage:iiia, alive, 1145 days
4579.2
TCGA-T1-A6J8-01A
68 years, male, white, alive, 23 days
4559.8
TCGA-NI-A4U2-01A
71 years, male, white, stage:iiia, dead, 1791 days
4545.1
TCGA-BC-A69H-01A
64 years, male, white, stage:ii, alive, 444 days
4544.6
TCGA-RC-A7SK-01A
59 years, male, asian, stage:i, alive, 472 days
4519.5
TCGA-UB-A7MF-01A
57 years, male, white, stage:iiia, dead, 214 days
4462.8
TCGA-FV-A23B-01A
70 years, female, white, stage:ii, dead, 1852 days
4421.4
TCGA-G3-A5SI-01A
44 years, male, asian, stage:ii, dead, 768 days
4411.4
TCGA-2Y-A9HB-01A
66 years, male, stage:i, alive, 260 days
4340.0
TCGA-DD-A1EB-01A
72 years, female, stage:i, alive, 2017 days
4299.9
TCGA-ZS-A9CF-01A
64 years, male, white, stage:ii, alive, 2412 days
4257.7
TCGA-CC-A7IL-01A
61 years, male, asian, stage:iiia, dead, 278 days
4203.6
TCGA-LG-A6GG-01A
79 years, female, white, stage:ii, alive, 387 days
4191.2
TCGA-EP-A2KA-01A
52 years, female, white, stage:iiia, dead, 627 days
4184.6
TCGA-2Y-A9H9-01A
70 years, male, white, stage:i, alive, 697 days
4145.9
TCGA-DD-AAVS-01A
56 years, male, asian, stage:i, alive, 1823 days
4141.2
TCGA-CC-A9FW-01A
68 years, male, asian, stage:iiia, alive, 248 days
4136.9
TCGA-DD-AACY-01A
61 years, male, asian, stage:i, alive, 1450 days
4129.7
TCGA-BC-A10Y-01A
76 years, male, white, dead, 711 days
4094.9
TCGA-ED-A8O6-01A
50 years, female, asian, stage:iiia, dead, 56 days
4065.4
TCGA-KR-A7K8-01A
57 years, male, stage:i, alive, 906 days
4019.6
TCGA-DD-A3A9-01A
64 years, female, white, stage:ivb, dead, 931 days
4019.2
TCGA-2Y-A9HA-01A
70 years, male, white, stage:ii, dead, 36 days
4002.1
TCGA-G3-A5SM-01A
58 years, male, white, stage:ii, alive, 520 days
3965.5
TCGA-ED-A627-01A
74 years, male, white, stage:i, alive, 423 days
3937.0
TCGA-2Y-A9GT-01A
51 years, male, white, stage:i, dead, 1624 days
3926.8
TCGA-DD-A4NO-01A
66 years, male, white, stage:i, alive, 2245 days
3917.2
TCGA-BC-A10Z-01A
62 years, female, white, stage:i, dead, 34 days
3914.4
TCGA-BC-A216-01A
62 years, female, white, stage:iiia, alive, 1351 days
3896.4
TCGA-DD-AAD2-01A
66 years, male, asian, stage:i, alive, 658 days
3891.3
TCGA-G3-AAV1-01A
51 years, male, asian, stage:iiic, dead, 359 days
3888.1
TCGA-DD-A11B-01A
73 years, male, white, stage:i, dead, 14 days
3872.4
TCGA-FV-A3I1-01A
female, white, stage:ii, dead, 247 days
3858.4
TCGA-DD-AAEE-01A
55 years, male, asian, stage:i, alive, 810 days
3818.2
TCGA-DD-AAEK-01A
51 years, male, asian, stage:ii, alive, 1067 days
3814.5
TCGA-CC-A3MB-01A
36 years, male, asian, stage:iiia, dead, 315 days
3803.2
TCGA-WQ-AB4B-01A
62 years, male, white, stage:ii, alive, 395 days
3789.3
TCGA-WX-AA44-01A
64 years, female, white, stage:i, alive, 615 days
3788.3
TCGA-DD-A4NL-01A
46 years, male, white, stage:i, alive, 1711 days
3779.3
TCGA-MI-A75H-01A
77 years, male, white, alive, 747 days
3722.6
TCGA-DD-AADC-01A
53 years, male, asian, stage:i, dead, 425 days
3690.8
TCGA-G3-AAV5-01A
67 years, male, white, stage:ii, alive, 354 days
3622.2
TCGA-O8-A75V-01A
54 years, male, stage:i, alive, 538 days
3564.5
TCGA-DD-AACP-01A
65 years, male, asian, stage:i, alive, 415 days
3528.2
TCGA-G3-A7M8-01A
31 years, male, asian, stage:i, alive, 430 days
3518.1
TCGA-FV-A3R2-01A
75 years, male, white, stage:i, dead, 194 days
3436.3
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:ii, alive, 1098 days
3409.1
TCGA-DD-AAE9-01A
69 years, male, asian, stage:i, alive, 722 days
3408.2
TCGA-FV-A3R3-01A
38 years, female, white, stage:i, dead, 366 days
3370.5
TCGA-MI-A75I-01A
61 years, male, black or african american, alive, 630 days
3366.1
TCGA-2Y-A9GX-01A
68 years, male, white, stage:i, alive, 2442 days
3364.7
TCGA-G3-A25Y-01A
52 years, female, asian, stage:i, dead, 452 days
3344.4
TCGA-DD-A1EG-01A
77 years, male, white, stage:i, dead, 1372 days
3306.0
TCGA-ZS-A9CD-01A
73 years, male, white, stage:ii, dead, 1386 days
3299.6
TCGA-FV-A2QQ-01A
80 years, male, white, stage:i, alive, 729 days
3246.3
TCGA-XR-A8TD-01A
49 years, female, white, stage:iiib, alive, 1030 days
3237.2
TCGA-DD-AAE3-01A
50 years, male, asian, stage:i, alive, 566 days
3230.9
TCGA-CC-5258-01A
48 years, male, asian, stage:ii, dead, 129 days
3227.7
TCGA-KR-A7K7-01A
61 years, female, white, stage:ii, alive, 951 days
3224.1
TCGA-DD-AAD6-01A
66 years, male, asian, stage:iiia, alive, 672 days
3221.2
TCGA-DD-A39V-01A
77 years, male, white, stage:ii, dead, 643 days
3209.6
TCGA-DD-AACV-01A
53 years, male, asian, stage:i, alive, 1531 days
3206.7
TCGA-4R-AA8I-01A
66 years, male, white, stage:ii, dead, 262 days
3190.4
TCGA-DD-A11A-01A
67 years, male, black or african american, stage:i, alive, 79 days
3186.9
TCGA-DD-AAVX-01A
38 years, male, asian, stage:ii, alive, 1570 days
3181.4
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:i, alive, 519 days
3159.2
TCGA-G3-A5SK-01A
58 years, male, white, stage:i, alive, 744 days
3141.9
TCGA-GJ-A9DB-01A
68 years, male, white, stage:i, dead, 67 days
3100.2
TCGA-BC-A10T-01A
76 years, male, white, dead, 837 days
3092.0
TCGA-DD-A4NS-01A
62 years, female, white, stage:i, dead, 2456 days
3073.6
TCGA-DD-AAC9-01A
51 years, male, asian, stage:i, alive, 347 days
3051.0
TCGA-XR-A8TC-01A
43 years, female, white, stage:i, alive, 1339 days
3015.2
TCGA-DD-AACA-01A
65 years, male, asian, stage:i, alive, 2301 days
2982.8
TCGA-MR-A520-01A
58 years, male, white, stage:i, alive, 229 days
2973.6
TCGA-DD-AAE2-01A
51 years, male, asian, stage:i, alive, 638 days
2945.9
TCGA-G3-A7M9-01A
70 years, male, white, stage:iiib, dead, 56 days
2942.6
TCGA-DD-AAW2-01A
69 years, male, asian, stage:i, alive, 1855 days
2932.7
TCGA-DD-AADL-01A
58 years, male, asian, stage:i, alive, 636 days
2926.9
TCGA-DD-AACT-01A
69 years, female, asian, stage:i, alive, 1562 days
2908.1
TCGA-HP-A5MZ-01A
62 years, male, stage:i, dead, 91 days
2881.6
TCGA-DD-AAD8-01A
73 years, female, asian, stage:i, alive, 1219 days
2776.1
TCGA-BD-A3EP-01A
76 years, female, black or african american, stage:i, alive, 409 days
2772.3
TCGA-DD-A4NR-01A
85 years, female, white, stage:i, dead, 9 days
2761.4
TCGA-DD-A1EF-01A
57 years, female, white, stage:i, dead, 394 days
2732.2
TCGA-DD-AAW3-01A
69 years, male, asian, stage:i, alive, 1633 days
2713.3
TCGA-DD-A4NP-01A
32 years, male, white, stage:i, alive, 3308 days
2704.6
TCGA-DD-AADP-01A
45 years, male, asian, stage:i, alive, 458 days
2673.3
TCGA-DD-A39Y-01A
67 years, male, asian, stage:i, dead, 171 days
2663.5
TCGA-DD-AACQ-01A
50 years, male, asian, stage:ii, dead, 432 days
2614.5
TCGA-RC-A6M4-01A
74 years, female, white, stage:iiia, alive, 22 days
2561.8
TCGA-DD-AADQ-01A
59 years, male, asian, stage:ii, alive, 436 days
2537.5
TCGA-DD-A4ND-01A
56 years, female, white, stage:i, alive, 2746 days
2513.4
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:iiia, alive, 20 days
2504.8
TCGA-XR-A8TE-01A
16 years, male, white, stage:iiia, alive, 925 days
2503.3
TCGA-2Y-A9GS-01A
58 years, male, white, dead, 724 days
2495.6
TCGA-DD-AAVR-01A
44 years, male, asian, stage:i, alive, 2513 days
2472.6
TCGA-G3-A3CI-01A
71 years, male, white, stage:i, alive, 180 days
2420.3
TCGA-EP-A3JL-01A
76 years, male, white, stage:i, alive, 303 days
2332.9
TCGA-BC-A3KF-01A
66 years, female, white, stage:i, alive, 8 days
2328.1
TCGA-DD-A4NJ-01A
54 years, female, white, stage:ii, alive, 928 days
2325.8
TCGA-DD-A3A8-01A
75 years, male, white, stage:ii, dead, 11 days
2319.7
TCGA-BD-A3ER-01A
62 years, male, white, stage:ii, alive, 1115 days
2313.8
TCGA-BC-A5W4-01A
69 years, male, white, stage:iiia, dead, 547 days
2313.6
TCGA-DD-A73F-01A
77 years, female, white, stage:i, alive, 1085 days
2313.1
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:i, dead, 438 days
2302.6
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:ii, alive, 594 days
2261.3
TCGA-CC-A8HT-01A
74 years, male, asian, stage:iiia, dead, 140 days
2260.8
TCGA-CC-A8HU-01A
39 years, female, asian, stage:iiia, dead, 344 days
2250.0
TCGA-G3-AAV3-01A
58 years, female, white, stage:ii, alive, 412 days
2226.9
TCGA-G3-A5SJ-01A
59 years, male, white, stage:i, alive, 698 days
2195.2
TCGA-BC-4072-01B
74 years, female, white, stage:iiia, dead, 1490 days
2190.4
TCGA-DD-AADU-01A
60 years, male, asian, stage:ii, alive, 554 days
2181.5
TCGA-DD-AACZ-01A
63 years, female, asian, stage:i, dead, 171 days
2103.4
TCGA-DD-A115-01A
53 years, male, white, stage:iiia, dead, 2542 days
2049.1
TCGA-DD-A73D-01A
68 years, female, white, stage:ii, alive, 693 days
2019.4
TCGA-5C-AAPD-01A
61 years, male, asian, stage:ii, alive, 20 days
1967.4
TCGA-G3-A6UC-01A
65 years, male, white, stage:iiib, alive, 671 days
1958.1
TCGA-DD-AAE6-01A
59 years, female, asian, stage:i, alive, 141 days
1941.3
TCGA-EP-A26S-01A
70 years, male, white, stage:i, alive, 608 days
1935.9
TCGA-UB-A7MB-01A
24 years, male, white, stage:ii, alive, 601 days
1899.2
TCGA-ZP-A9D0-01A
67 years, female, black or african american, alive, 1091 days
1897.1
TCGA-DD-A39W-01A
29 years, female, white, stage:iii, dead, 827 days
1851.5
TCGA-MI-A75C-01A
64 years, male, white, stage:i, alive, 291 days
1843.3
TCGA-ZS-A9CG-01A
55 years, male, white, stage:ii, alive, 341 days
1841.3
TCGA-DD-A4NI-01A
67 years, male, white, stage:ii, alive, 816 days
1833.1
TCGA-ZP-A9CZ-01A
72 years, male, asian, alive, 706 days
1829.8
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:i, dead, 19 days
1826.1
TCGA-K7-AAU7-01A
61 years, male, white, stage:ii, alive, 359 days
1822.5
TCGA-DD-A113-01A
55 years, female, white, stage:ii, alive, 2425 days
1753.2
TCGA-EP-A3RK-01A
73 years, male, white, stage:iiia, alive, 363 days
1741.6
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:i, alive, 12 days
1733.6
TCGA-EP-A12J-01A
63 years, male, black or african american, stage:i, alive, 570 days
1724.9
TCGA-DD-AACB-01A
74 years, female, asian, stage:i, alive, 2324 days
1724.7
TCGA-PD-A5DF-01A
58 years, female, white, stage:iiib, dead, 639 days
1710.6
TCGA-DD-AAVY-01A
56 years, male, asian, stage:iiia, alive, 1970 days
1666.0
TCGA-ED-A5KG-01A
60 years, female, asian, stage:ii, alive, 854 days
1658.4
TCGA-RC-A6M5-01A
20 years, female, white, stage:iva, alive, 15 days
1654.0
TCGA-KR-A7K0-01A
65 years, male, white, stage:i, dead, 65 days
1648.3
TCGA-DD-A1ED-01A
68 years, male, white, stage:i, alive, 2301 days
1640.7
TCGA-FV-A2QR-01A
male, white, stage:i, dead, 581 days
1632.4
TCGA-RC-A6M6-01A
75 years, male, white, stage:ii, alive, 9 days
1616.6
TCGA-DD-AAVV-01A
56 years, male, asian, stage:ii, alive, 2455 days
1572.9
TCGA-CC-5262-01A
67 years, male, asian, stage:iiic, dead, 103 days
1513.6
TCGA-ZP-A9D4-01A
64 years, female, white, alive, 395 days
1492.9
TCGA-CC-A3MC-01A
54 years, male, asian, stage:iiia, alive, 363 days
1485.4
TCGA-DD-A39X-01A
78 years, female, white, stage:i, dead, 1694 days
1483.5
TCGA-BC-A10W-01A
50 years, male, asian, dead, 91 days
1477.4
TCGA-DD-A73B-01A
72 years, female, white, stage:i, dead, 283 days
1473.7
TCGA-CC-A5UE-01A
48 years, male, asian, stage:iiib, dead, 272 days
1470.4
TCGA-2Y-A9GW-01A
64 years, male, white, stage:i, dead, 1271 days
1454.0
TCGA-CC-5261-01A
44 years, male, asian, stage:ii, dead, 97 days
1453.1
TCGA-DD-AAD0-01A
73 years, female, asian, stage:i, alive, 137 days
1428.8
TCGA-5C-A9VG-01A
58 years, male, white, stage:ii, alive, 328 days
1411.5
TCGA-CC-A8HV-01A
51 years, female, asian, stage:ii, dead, 279 days
1400.7
TCGA-CC-5264-01A
71 years, male, asian, stage:iiia, dead, 102 days
1383.4
TCGA-BC-A8YO-01A
66 years, female, white, stage:iiic, alive, 562 days
1367.3
TCGA-G3-A7M6-01A
60 years, female, white, stage:i, alive, 632 days
1301.6
TCGA-DD-A1EK-01A
64 years, female, white, stage:ivb, dead, 558 days
1253.3
TCGA-ZP-A9CV-01A
59 years, male, white, dead, 1088 days
1222.7
TCGA-5R-AA1D-01A
17 years, female, white, stage:iiia, alive, 449 days
1218.7
TCGA-DD-AACH-01A
69 years, male, asian, stage:ii, dead, 195 days
1180.0
TCGA-2Y-A9GY-01A
64 years, female, white, stage:ii, dead, 757 days
1163.7
TCGA-G3-A25U-01A
63 years, female, asian, stage:i, alive, 1636 days
1135.7
TCGA-WQ-A9G7-01A
female, white, alive, 30 days
1092.5
TCGA-DD-AAEG-01A
59 years, female, asian, stage:i, alive, 719 days
1080.1
TCGA-G3-A5SL-01A
70 years, male, white, stage:ii, alive, 621 days
1074.2
TCGA-GJ-A6C0-01A
75 years, female, white, stage:ii, dead, 31 days
1063.6
TCGA-DD-A4NB-01A
25 years, male, white, stage:i, alive, 989 days
1047.8
TCGA-G3-A25S-01A
64 years, male, white, stage:i, dead, 416 days
1015.0
TCGA-DD-A1EA-01A
68 years, male, asian, stage:ii, alive, 2415 days
966.3
TCGA-ED-A97K-01A
54 years, male, asian, stage:iiia, alive, 6 days
945.6
TCGA-XR-A8TG-01A
59 years, male, white, stage:i, alive, 898 days
926.3
TCGA-DD-AAW1-01A
55 years, male, asian, stage:iiia, alive, 1989 days
911.2
TCGA-BC-A10U-01A
69 years, male, white, dead, 837 days
866.4
TCGA-DD-A4NE-01A
75 years, female, white, stage:iiia, dead, 660 days
845.7
TCGA-G3-A3CK-01A
61 years, male, asian, stage:i, alive, 585 days
817.6
TCGA-CC-A7IH-01A
58 years, male, asian, stage:iiia, alive, 365 days
806.6
TCGA-DD-AACL-01A
66 years, female, asian, stage:i, dead, 107 days
787.5
TCGA-DD-AACS-01A
39 years, male, asian, stage:i, alive, 1804 days
748.7
TCGA-UB-A7MA-01A
62 years, female, white, stage:ii, alive, 848 days
737.4
TCGA-DD-A4NQ-01A
60 years, male, white, stage:ii, dead, 373 days
724.3
TCGA-MR-A8JO-01A
34 years, male, white, stage:i, alive, 330 days
686.1
TCGA-DD-A4NG-01A
77 years, male, white, stage:iiia, dead, 802 days
676.6
TCGA-BC-4073-01B
73 years, male, white, stage:iiia, alive, 849 days
671.6
TCGA-DD-AACX-01A
66 years, male, asian, stage:ii, alive, 170 days
656.3
TCGA-G3-A25T-01A
45 years, female, white, stage:iiia, alive, 1553 days
626.1
TCGA-G3-A3CG-01A
80 years, male, white, stage:i, alive, 673 days
613.4
TCGA-CC-A7IG-01A
47 years, male, asian, stage:ii, dead, 299 days
584.4
TCGA-2Y-A9H2-01A
64 years, female, white, stage:i, alive, 1731 days
580.8
TCGA-CC-A3MA-01A
61 years, male, asian, stage:iiia, dead, 303 days
512.1
TCGA-BC-A217-01A
75 years, female, white, stage:ii, dead, 1397 days
490.3
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:i, dead, 52 days
476.9
TCGA-DD-A1EE-01A
73 years, male, white, stage:iiia, dead, 349 days
460.1
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:ii, dead, 415 days
408.2
TCGA-DD-A114-01A
42 years, male, black or african american, stage:ii, dead, 1149 days
390.9
TCGA-UB-A7MC-01A
59 years, male, white, stage:iiia, alive, 500 days
335.7
TCGA-ZP-A9D1-01A
56 years, female, white, alive, 21 days
315.8
TCGA-BC-A10R-01A
66 years, female, white, dead, 308 days
299.5
TCGA-YA-A8S7-01A
69 years, male, white, stage:iiia, dead, 412 days
291.7
TCGA-ED-A7XP-01A
53 years, female, asian, stage:ii, alive, 400 days
238.2
TCGA-DD-A4NF-01A
72 years, male, white, stage:i, alive, 942 days
236.9
TCGA-LG-A9QC-01A
48 years, male, white, stage:i, alive, 425 days
233.1
TCGA-CC-A7IK-01A
59 years, male, asian, stage:iiia, dead, 262 days
228.6
TCGA-G3-A25X-01A
73 years, male, asian, stage:ii, alive, 1779 days
197.6
TCGA-CC-A7II-01A
55 years, male, asian, stage:iiia, alive, 399 days
189.4
TCGA-DD-AAVP-01A
48 years, male, asian, stage:i, alive, 2752 days
169.4
TCGA-G3-AAV2-01A
50 years, male, white, stage:i, alive, 372 days
160.3
TCGA-DD-A3A4-01A
37 years, male, white, stage:iiia, dead, 612 days
141.4
TCGA-DD-A4NH-01A
65 years, female, white, stage:iiib, alive, 917 days
139.6
TCGA-DD-AA3A-01A
81 years, female, white, stage:i, dead, 410 days
135.2
TCGA-ZP-A9D2-01A
51 years, male, white, dead, 765 days
121.5
TCGA-DD-AADY-01A
55 years, female, asian, stage:i, alive, 555 days
118.0
TCGA-DD-AAC8-01A
72 years, male, asian, stage:i, dead, 16 days
85.3
TCGA-CC-A5UD-01A
45 years, male, asian, stage:iiia, dead, 304 days
51.6
TCGA-5R-AA1C-01A
57 years, male, white, stage:ii, alive, 520 days
42.2
TCGA-DD-A1EC-01A
20 years, female, white, stage:i, alive, 602 days
40.4
TCGA-BC-A3KG-01A
68 years, female, white, stage:ii, alive, 680 days
38.4
TCGA-BC-A112-01A
80 years, male, white, dead, 153 days
20.2
TCGA-CC-A1HT-01A
50 years, male, asian, stage:iiia, dead, 101 days
17.3
TCGA-WX-AA47-01A
33 years, female, white, stage:iiia, dead, 556 days
12.3
TCGA-DD-A73E-01A
66 years, male, white, stage:i, alive, 44 days
9.8
TCGA-DD-A3A6-01A
72 years, female, white, stage:ii, dead, 3258 days
8.8
TCGA-DD-AAD5-01A
54 years, male, asian, stage:i, alive, 1345 days
8.6
TCGA-G3-AAV7-01A
38 years, male, asian, stage:ii, alive, 361 days
6.9
TCGA-CC-5260-01A
61 years, female, asian, stage:iiic, dead, 87 days
5.6
TCGA-ED-A7PX-01A
48 years, female, asian, stage:ii, alive, 6 days
5.5
TCGA-FV-A3I0-01A
76 years, female, white, stage:ii, alive, 848 days
4.5
TCGA-CC-5263-01A
35 years, male, asian, stage:iiia, dead, 129 days
3.8
TCGA-BC-A10Q-01A
72 years, female, white, dead, 1135 days
3.4
TCGA-ED-A82E-01A
60 years, female, asian, stage:iiia, alive, 408 days
2.5
TCGA-DD-A4NA-01A
67 years, female, white, stage:iiic, alive, 1008 days
2.1
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:ii, alive, 382 days
0.9
TCGA-CC-A3M9-01A
45 years, male, asian, stage:iiia, dead, 300 days
0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high. This score is based on the staining intensity and fraction of stained cells.
The Human Protein Atlas project is funded
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