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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression (NX) levels for human tissues was created by combining the data from these three transcriptomics datasets (HPA, GTEx and FANTOM5).
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as average pTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. pTPM values of the individual samples are presented next to the box plot.
Max pTPM: 857.3
Min pTPM: 35.4
Std pTPM: 190.6
Median pTPM: 304.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
857.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
828.1
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
763.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
739.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
732.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
677.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
675.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
655.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
638.1
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
629.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
605.4
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
603.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
600.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
584.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
578.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
574.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
569.7
GTEX-15EO6-0011-R4a-SM-7KULH
50-59 years, male
557.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
537.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
504.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
501.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
499.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
490.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
458.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
449.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
440.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
431.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
429.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
425.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
425.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
418.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
407.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
404.1
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
401.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
401.0
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
397.4
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
380.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
371.1
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
370.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
368.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
360.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
353.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
345.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
344.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
334.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
330.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
321.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
319.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
307.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
306.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
302.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
302.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
302.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
295.9
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
292.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
285.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
273.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
262.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
259.4
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
256.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
251.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
238.6
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
234.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
233.8
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
228.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
226.6
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
221.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
219.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
213.8
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
211.6
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
201.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
183.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
182.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
180.7
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
179.5
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
174.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
167.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
164.8
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
163.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
162.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
159.0
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
157.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
153.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
149.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
149.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
145.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
140.3
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
138.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
135.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
132.9
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
123.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
117.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
114.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
109.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
102.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
88.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
87.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
83.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
81.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
35.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. pTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
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