We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression (NX) levels for human tissues was created by combining the data from these three transcriptomics datasets (HPA, GTEx and FANTOM5).
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as average pTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. pTPM values of the individual samples are presented next to the box plot.
Max pTPM: 544.7
Min pTPM: 1.7
Std pTPM: 135.5
Median pTPM: 153.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
544.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
535.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
530.0
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
520.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
508.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
486.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
479.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
444.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
421.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
355.9
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
350.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
344.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
334.3
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
326.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
325.2
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
323.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
320.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
307.5
GTEX-15EO6-0011-R4a-SM-7KULH
50-59 years, male
305.2
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
304.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
286.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
282.3
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
271.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
268.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
264.2
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
257.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
257.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
255.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
248.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
245.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
235.8
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
233.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
230.7
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
228.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
224.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
210.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
207.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
206.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
205.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
194.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
190.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
189.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
187.8
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
184.2
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
183.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
175.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
174.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
171.1
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
161.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
155.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
152.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
148.1
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
141.4
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
140.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
140.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
140.4
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
139.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
136.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
129.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
128.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
128.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
127.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
125.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
121.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
120.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
101.4
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
97.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
95.9
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
94.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
92.4
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
89.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
89.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
85.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
80.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
76.5
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
75.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
70.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
67.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
64.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
62.1
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
62.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
55.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
54.7
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
54.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
54.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
50.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
48.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
45.9
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
45.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
40.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
39.1
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
35.4
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
33.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
31.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
29.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
26.6
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
13.1
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
9.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
2.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
1.7
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. pTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
MENU
