We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression (NX) levels for human tissues was created by combining the data from these three transcriptomics datasets (HPA, GTEx and FANTOM5).
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA007179
Glial cells
Not detected
Neuronal cells
Low
Neuronal projections
Medium
Synapses
High
CAUDATE - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high. This score is based on the staining intensity and fraction of stained cells.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as average pTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. pTPM values of the individual samples are presented next to the box plot.
Brain - Caudate (basal ganglia) Average pTPM: 60.3
Samples: 160
Max pTPM: 155.2
Min pTPM: 2.9
Std pTPM: 36.2
Median pTPM: 60.1
GTEX-13G51-0011-R5a-SM-5L3EB
60-69 years, male
155.2
GTEX-T6MN-0011-R5A-SM-32QPD
50-59 years, male
154.7
GTEX-131YS-0011-R5b-SM-5K7YB
60-69 years, female
151.6
GTEX-15ER7-0011-R5b-SM-6M46T
20-29 years, female
143.7
GTEX-15CHQ-0011-R5b-SM-6AJAN
60-69 years, male
135.2
GTEX-WHSE-0011-R5A-SM-3P5ZO
20-29 years, male
128.7
GTEX-Q2AG-0011-R5A-SM-2HMJH
40-49 years, female
125.2
GTEX-13X6K-0011-R5b-SM-5PNUE
60-69 years, female
125.1
GTEX-13SLX-0011-R5a-SM-5O9BV
50-59 years, female
115.0
GTEX-13O3Q-0011-R5b-SM-5P9H4
50-59 years, male
114.7
GTEX-13OW8-0011-R5b-SM-5L3FQ
60-69 years, male
113.4
GTEX-18464-0011-R5b-SM-718A6
50-59 years, male
113.0
GTEX-QVJO-0011-R5A-SM-2S1QM
60-69 years, female
111.9
GTEX-15DYW-0011-R5a-SM-6M46W
60-69 years, female
111.7
GTEX-14BMV-0011-R5b-SM-62LFT
50-59 years, male
110.8
GTEX-14JIY-0011-R5b-SM-62LE7
60-69 years, male
108.7
GTEX-1AX9I-0011-R5b-SM-793DI
60-69 years, male
105.7
GTEX-13FXS-0011-R5b-SM-5LZYE
50-59 years, male
104.6
GTEX-15SHU-0011-R5a-SM-7938Q
40-49 years, female
104.2
GTEX-ZUA1-0011-R5b-SM-51MTG
40-49 years, male
103.9
GTEX-13N1W-0011-R5b-SM-5MR5Q
70-79 years, male
103.4
GTEX-12ZZY-0011-R5a-SM-5EGL9
60-69 years, male
100.8
GTEX-13X6J-0011-R5b-SM-5PNWT
50-59 years, male
100.6
GTEX-RU72-0011-R5A-SM-2TF6U
50-59 years, female
99.1
GTEX-16YQH-0011-R5b-SM-7938U
30-39 years, male
97.1
GTEX-12WSC-0011-R5b-SM-5CVNS
50-59 years, male
96.6
GTEX-1313W-0011-R5b-SM-5L3EP
50-59 years, female
95.5
GTEX-TSE9-0011-R5A-SM-3DB7J
60-69 years, female
93.9
GTEX-14PN4-0011-R5a-SM-686ZV
50-59 years, male
93.4
GTEX-WL46-0011-R5A-SM-3LK6V
50-59 years, male
93.4
GTEX-11GSP-0011-R5a-SM-57WBE
60-69 years, female
92.8
GTEX-13NYS-0011-R5a-SM-5MR4D
60-69 years, male
92.1
GTEX-17HII-0011-R5a-SM-7LG51
50-59 years, male
91.2
GTEX-X585-0011-R5A-SM-46MVI
50-59 years, male
90.1
GTEX-ZAB4-0011-R5a-SM-4SOKC
40-49 years, male
89.6
GTEX-145MH-0011-R5a-SM-5P9JT
50-59 years, male
89.5
GTEX-15EO6-0011-R5b-SM-7KUDZ
50-59 years, male
89.4
GTEX-P44H-0011-R5A-SM-2XCEX
40-49 years, male
89.2
GTEX-N7MT-0011-R5a-SM-2I3G6
60-69 years, female
89.1
GTEX-11H98-0011-R5b-SM-57WCF
50-59 years, male
88.9
GTEX-11OF3-0011-R5a-SM-57WB4
60-69 years, male
88.6
GTEX-13VXU-0011-R5a-SM-5O9D7
50-59 years, male
88.0
GTEX-S7SE-0011-R5A-SM-2XCDA
50-59 years, male
87.1
GTEX-1399T-0011-R5b-SM-5IJDK
60-69 years, male
86.0
GTEX-N7MS-0011-R5a-SM-2HMK8
60-69 years, male
84.8
GTEX-13JUV-0011-R5a-SM-5LZY5
40-49 years, female
84.7
GTEX-WZTO-0011-R5B-SM-3NMC5
40-49 years, male
84.5
GTEX-14BIM-0011-R5b-SM-5S2RM
60-69 years, female
84.4
GTEX-T5JC-0011-R5A-SM-32PLK
20-29 years, male
83.1
GTEX-13FHO-0011-R5b-SM-5LZZ3
60-69 years, male
82.6
GTEX-WWYW-0011-R5A-SM-3NB3E
50-59 years, female
82.1
GTEX-13NYB-0011-R5a-SM-5MR45
40-49 years, male
80.9
GTEX-13O3O-0011-R5b-SM-5KM44
60-69 years, female
78.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M
60-69 years, male
77.8
GTEX-13RTJ-0011-R5a-SM-5P9HR
60-69 years, male
77.6
GTEX-UTHO-0011-R5A-SM-3GIJD
60-69 years, male
77.5
GTEX-WVLH-0011-R5A-SM-3MJFW
50-59 years, male
76.8
GTEX-13OW6-0011-R5a-SM-5O9BK
50-59 years, male
76.5
GTEX-13S7M-0011-R5b-SM-5P9HS
60-69 years, female
75.4
GTEX-145LS-0011-R5a-SM-5SI65
60-69 years, female
75.3
GTEX-14ABY-0011-R5b-SM-5SI7B
50-59 years, male
75.3
GTEX-13FLW-0011-R5a-SM-5LZX6
50-59 years, male
74.5
GTEX-14C39-0011-R5b-SM-5ZZV1
40-49 years, male
74.3
GTEX-132Q8-0011-R5a-SM-5IJDM
60-69 years, male
70.7
GTEX-13OVL-0011-R5b-SM-5L3FU
50-59 years, male
70.7
GTEX-ZE9C-0011-R5a-SM-5EGLO
60-69 years, male
69.8
GTEX-14LLW-0011-R5b-SM-5ZZU6
70-79 years, female
69.6
GTEX-12WSF-0011-R5a-SM-5HL8K
70-79 years, male
68.2
GTEX-13CZV-0011-R5a-SM-5K7XA
60-69 years, male
67.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y
60-69 years, male
66.7
GTEX-1A3MX-0011-R5a-SM-79OM5
60-69 years, male
66.3
GTEX-13OW5-0011-R5b-SM-5L3FR
60-69 years, male
65.0
GTEX-14PJO-0011-R5a-SM-6AJBZ
60-69 years, male
63.9
GTEX-13OW7-0011-R5b-SM-5O9DM
50-59 years, male
63.8
GTEX-12WSD-0011-R5b-SM-5CVNG
60-69 years, female
61.8
GTEX-15DCD-0011-R5a-SM-69LPC
70-79 years, female
61.6
GTEX-R55E-0011-R5A-SM-2TC5N
20-29 years, male
61.5
GTEX-11NV4-0011-R5a-SM-5NQ88
60-69 years, male
61.0
GTEX-139TT-0011-R5b-SM-5K7W8
60-69 years, male
60.5
GTEX-14ASI-0011-R5b-SM-6EU2M
60-69 years, male
60.4
GTEX-14DAQ-0011-R5b-SM-5YYAK
60-69 years, female
59.8
GTEX-T2IS-0011-R5A-SM-32QP4
20-29 years, female
58.8
GTEX-14E6D-0011-R5b-SM-69LQR
50-59 years, male
57.8
GTEX-RVPV-0011-R5A-SM-2TF69
60-69 years, male
56.9
GTEX-13OVH-0011-R5b-SM-5KM4L
70-79 years, male
55.9
GTEX-ZE7O-0011-R5a-SM-57WBO
50-59 years, female
55.5
GTEX-NL4W-0011-R5a-SM-2I3GD
50-59 years, male
55.0
GTEX-17F97-0011-R5a-SM-7LG4Z
50-59 years, male
53.6
GTEX-17EVP-0011-R5b-SM-7DHKW
40-49 years, male
53.4
GTEX-1B8L1-0011-R5a-SM-7DHN5
60-69 years, male
52.2
GTEX-13X6I-0011-R5a-SM-5PNWW
60-69 years, male
51.6
GTEX-13FLV-0011-R5a-SM-5LZWT
50-59 years, male
50.9
GTEX-Z93S-0011-R5b-SM-4RGNI
50-59 years, male
49.3
GTEX-13JVG-0011-R5a-SM-5MR4O
60-69 years, male
49.0
GTEX-12ZZW-0011-R5a-SM-5DUVN
50-59 years, male
48.2
GTEX-13CIG-0011-R5b-SM-5L3F2
50-59 years, male
47.9
GTEX-Y8DK-0011-R5B-SM-4RTW6
60-69 years, male
47.4
GTEX-14PQA-0011-R5b-SM-6AJC2
50-59 years, female
47.1
GTEX-14JG1-0011-R5a-SM-62LED
40-49 years, male
46.9
GTEX-NPJ8-0011-R5a-SM-2HMJY
40-49 years, male
45.2
GTEX-1B8SF-0011-R5a-SM-79OOO
60-69 years, male
42.9
GTEX-PVOW-0011-R5A-SM-32PL7
40-49 years, male
42.4
GTEX-12WSH-0011-R5b-SM-5P9F3
50-59 years, male
41.6
GTEX-NL3H-0011-R5a-SM-2I3GB
60-69 years, male
40.9
GTEX-OXRN-0011-R5A-SM-2I5EF
50-59 years, male
40.2
GTEX-XMD1-0011-R5A-SM-4AT47
60-69 years, male
39.6
GTEX-13SLW-0011-R5b-SM-5SI6Z
70-79 years, male
39.3
GTEX-12ZZX-0011-R5a-SM-5HL89
40-49 years, female
37.0
GTEX-ZXG5-0011-R5b-SM-57WBN
60-69 years, male
36.4
GTEX-14BIN-0011-R5b-SM-5SI78
50-59 years, female
35.6
GTEX-ZVZQ-0011-R5b-SM-57WDC
60-69 years, female
34.5
GTEX-17HHY-0011-R5b-SM-79OMZ
50-59 years, male
33.7
GTEX-YFC4-0011-R5a-SM-4RGLR
40-49 years, female
31.3
GTEX-15G19-0011-R5b-SM-6M46P
60-69 years, male
30.4
GTEX-ZF28-0011-R5a-SM-4WWCZ
60-69 years, male
30.4
GTEX-YJ89-0011-R5a-SM-4V6GM
60-69 years, male
28.8
GTEX-18465-0011-R5a-SM-72D5J
50-59 years, male
28.4
GTEX-15DDE-0011-R5b-SM-7KULJ
50-59 years, female
27.2
GTEX-13112-0011-R5b-SM-5DUV8
50-59 years, male
26.5
GTEX-144GL-0011-R5b-SM-5PNUJ
50-59 years, male
25.9
GTEX-PWO3-0011-R5A-SM-2I5EZ
60-69 years, female
25.9
GTEX-11WQC-0011-R5a-SM-5BC74
60-69 years, male
25.2
GTEX-OXRO-0011-R5A-SM-2I5EG
60-69 years, female
24.4
GTEX-ZV68-0011-R5a-SM-4YCDW
50-59 years, female
24.0
GTEX-QMR6-0011-R5A-SM-32PKT
50-59 years, male
23.5
GTEX-144GO-0011-R5a-SM-5PNUR
60-69 years, male
23.0
GTEX-17HG3-0011-R5a-SM-7DUEW
30-39 years, female
22.4
GTEX-17MF6-0011-R5a-SM-731BA
40-49 years, male
20.3
GTEX-13PLJ-0011-R5a-SM-5O9BG
60-69 years, female
20.2
GTEX-X4XX-0011-R5A-SM-46MWN
60-69 years, male
20.1
GTEX-ZVT3-0011-R5a-SM-51MSI
60-69 years, female
19.9
GTEX-13PVQ-0011-R5b-SM-5O9DI
50-59 years, male
19.5
GTEX-17EVQ-0011-R5a-SM-7LT92
70-79 years, male
19.1
GTEX-X261-0011-R5A-SM-3NMB4
50-59 years, male
18.7
GTEX-13FHP-0011-R5b-SM-5LZY2
50-59 years, male
18.6
GTEX-1A8G6-0011-R5b-SM-7IGQG
60-69 years, male
18.6
GTEX-QDT8-0011-R5A-SM-32PKN
30-39 years, female
18.4
GTEX-NPJ7-0011-R5a-SM-33HBK
60-69 years, female
16.5
GTEX-12WSA-0011-R5b-SM-5GU5I
60-69 years, male
16.4
GTEX-13IVO-0011-R5a-SM-5L3CY
70-79 years, male
16.3
GTEX-S7PM-0011-R5A-SM-3NM8G
60-69 years, male
16.1
GTEX-13N2G-0011-R5a-SM-5MR33
60-69 years, male
15.7
GTEX-1445S-0011-R5a-SM-5PNUS
60-69 years, male
15.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8
60-69 years, female
15.6
GTEX-13OVJ-0011-R5a-SM-5P9H7
50-59 years, female
14.9
GTEX-13CF2-0011-R5a-SM-5LZWS
60-69 years, male
14.6
GTEX-ZDXO-0011-R5a-SM-4WKG5
60-69 years, male
14.6
GTEX-139TS-0011-R5b-SM-5J2MZ
60-69 years, male
14.5
GTEX-16Z82-0011-R5a-SM-7EPGB
60-69 years, male
14.5
GTEX-1477Z-0011-R5b-SM-5PNUO
60-69 years, male
13.8
GTEX-139T8-0011-R5b-SM-5J1MO
60-69 years, male
12.6
GTEX-183WM-0011-R5a-SM-718A4
70-79 years, female
11.9
GTEX-11UD1-0011-R5b-SM-5P9FP
40-49 years, female
11.5
GTEX-16NPV-0011-R5a-SM-7EPGK
50-59 years, female
10.0
GTEX-145MG-0011-R5b-SM-5S2VU
50-59 years, male
8.7
GTEX-13NZA-0011-R5b-SM-5KM4K
60-69 years, male
6.6
GTEX-14753-0011-R5a-SM-5S2VW
60-69 years, male
6.3
GTEX-139TU-0011-R5b-SM-5L3E1
60-69 years, male
5.3
GTEX-13PL6-0011-R5b-SM-5O9BI
40-49 years, female
4.5
GTEX-11TUW-0011-R5b-SM-5BC6Q
60-69 years, male
2.9
Show allShow less
CAUDATE - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. pTPM values of the individual samples are presented next to the box plot.