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STOMACH CANCER - Interactive survival scatter ploti
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FN1 is prognostic, high expression is unfavourable in stomach cancer
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
: Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A 5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A 5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as median FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
94.9
Number of samples
354
Samples
Sample
Description
FPKM
TCGA-MX-A663-01A
66 years, male, white, stage:iia, dead, 300 days
740.6
TCGA-KB-A93G-01A
68 years, male, white, stage:ib, alive, 613 days
681.4
TCGA-RD-A8N2-01A
59 years, female, white, stage:ib, alive, 3540 days
608.1
TCGA-VQ-AA64-01A
68 years, male, white, stage:iiib, dead, 560 days
496.7
TCGA-BR-6709-01A
57 years, female, white, stage:iiib, dead, 370 days
449.8
TCGA-VQ-A91A-01A
67 years, male, white, stage:iiib, alive, 1200 days
365.1
TCGA-BR-A4IV-01A
47 years, male, asian, stage:iiib, dead, 869 days
341.6
TCGA-BR-7959-01A
59 years, male, white, stage:iiia, alive, 1010 days
341.3
TCGA-BR-4201-01A
66 years, female, white, dead, 940 days
322.7
TCGA-BR-4256-01A
80 years, male, white, dead, 284 days
321.9
TCGA-FP-A4BF-01A
68 years, male, white, stage:iiia, dead, 168 days
307.8
TCGA-D7-8578-01A
72 years, male, white, stage:ib, alive, 643 days
306.6
TCGA-CD-5798-01A
83 years, male, asian, stage:ii, alive, 408 days
301.1
TCGA-BR-8059-01A
72 years, male, white, stage:iii, dead, 439 days
294.4
TCGA-CG-4475-01A
76 years, male, stage:iib, alive, 699 days
294.4
TCGA-D7-A748-01A
41 years, female, white, stage:iv, dead, 132 days
287.7
TCGA-D7-6818-01A
53 years, male, white, stage:iiia, dead, 376 days
277.6
TCGA-RD-A8N5-01A
78 years, male, white, stage:iiia, dead, 1747 days
275.1
TCGA-SW-A7EB-01A
45 years, male, white, stage:iiia, alive, 176 days
273.3
TCGA-FP-8209-01A
49 years, male, white, stage:ib, dead, 1811 days
270.4
TCGA-VQ-A8E2-01A
57 years, male, asian, stage:iiib, alive, 1319 days
269.5
TCGA-BR-8295-01A
60 years, female, white, stage:iib, dead, 67 days
258.4
TCGA-VQ-A91Y-01A
67 years, male, white, stage:iiic, dead, 296 days
255.0
TCGA-VQ-A91D-01A
70 years, male, white, stage:iiic, dead, 356 days
254.7
TCGA-BR-6458-01A
57 years, female, white, stage:iib, dead, 588 days
247.7
TCGA-BR-6705-01A
68 years, female, white, stage:iiib, dead, 779 days
244.5
TCGA-BR-8384-01A
69 years, male, white, stage:iiic, alive, 113 days
231.5
TCGA-BR-8485-01A
68 years, female, white, stage:iiic, alive, 280 days
227.2
TCGA-RD-A8MW-01A
72 years, male, white, stage:iiib, dead, 1153 days
219.9
TCGA-BR-8380-01A
55 years, male, white, stage:iiic, dead, 21 days
218.7
TCGA-VQ-A94P-01A
57 years, male, white, dead, 81 days
216.7
TCGA-BR-A4J9-01A
55 years, male, white, stage:iia, alive, 14 days
215.6
TCGA-CD-5803-01A
78 years, female, asian, stage:ii, dead, 341 days
215.3
TCGA-D7-A6EZ-01A
66 years, male, white, stage:iiia, dead, 618 days
213.9
TCGA-D7-8572-01A
57 years, male, white, stage:iib, alive, 511 days
212.2
TCGA-VQ-A94O-01A
74 years, male, black or african american, stage:iiic, dead, 640 days
208.0
TCGA-CG-4465-01A
69 years, female, stage:iv, dead, 274 days
203.6
TCGA-F1-6874-01A
79 years, male, white, stage:ib, alive, 440 days
200.6
TCGA-BR-4257-01A
79 years, female, white, dead, 294 days
197.9
TCGA-BR-8081-01A
71 years, female, white, stage:iib, alive, 981 days
184.5
TCGA-VQ-A8PB-01A
65 years, female, white, stage:ii, dead, 1043 days
183.9
TCGA-ZQ-A9CR-01A
79 years, female, white, stage:iiic, dead, 24 days
183.1
TCGA-IN-A7NT-01A
73 years, female, white, stage:iib, alive, 323 days
182.3
TCGA-VQ-A8PP-01A
76 years, male, stage:iv, dead, 712 days
182.3
TCGA-BR-8588-01A
55 years, female, white, stage:iib, alive, 389 days
179.5
TCGA-CD-8529-01A
65 years, male, asian, stage:iv, alive, 374 days
178.8
TCGA-B7-A5TI-01A
52 years, male, white, stage:iiic, alive, 595 days
177.0
TCGA-CG-5719-01A
54 years, female, stage:iv, alive, 31 days
176.9
TCGA-HU-8602-01A
58 years, female, asian, stage:iib, alive, 679 days
173.9
TCGA-BR-6456-01A
74 years, female, white, stage:iib, dead, 526 days
172.9
TCGA-BR-A4J5-01A
56 years, male, asian, stage:iiia, alive, 862 days
172.6
TCGA-BR-7851-01A
74 years, male, white, stage:iib, dead, 574 days
165.3
TCGA-CD-8528-01A
43 years, female, asian, stage:iiia, alive, 375 days
164.5
TCGA-BR-7715-01A
65 years, male, white, stage:iia, alive, 1023 days
164.1
TCGA-CG-4301-01A
75 years, female, stage:iv, alive, 92 days
161.5
TCGA-RD-A7BW-01A
68 years, female, white, stage:ib, dead, 156 days
160.9
TCGA-BR-8683-01A
75 years, male, asian, stage:iiib, dead, 300 days
158.1
TCGA-BR-6566-01A
64 years, female, white, stage:iia, alive, 997 days
157.8
TCGA-BR-6457-01A
69 years, male, white, stage:iia, alive, 416 days
157.1
TCGA-BR-8592-01A
63 years, female, white, stage:iiib, dead, 191 days
156.9
TCGA-CD-A489-01A
58 years, male, asian, stage:iia, dead, 344 days
154.6
TCGA-BR-7723-01A
59 years, male, white, stage:iiib, dead, 874 days
153.7
TCGA-FP-8210-01A
48 years, male, asian, stage:iiia, dead, 153 days
152.2
TCGA-VQ-A8P5-01A
67 years, male, white, stage:iia, dead, 235 days
151.8
TCGA-VQ-A928-01A
49 years, male, white, stage:iv, dead, 174 days
151.1
TCGA-BR-6852-01A
64 years, female, white, stage:iia, alive, 1367 days
150.0
TCGA-RD-A8NB-01A
80 years, female, white, stage:iiia, dead, 513 days
148.7
TCGA-VQ-A922-01A
70 years, male, stage:iv, dead, 275 days
147.1
TCGA-B7-A5TK-01A
51 years, male, white, stage:iiia, alive, 288 days
146.0
TCGA-BR-8590-01A
62 years, male, white, stage:iiic, dead, 284 days
144.5
TCGA-CD-A48C-01A
80 years, female, asian, stage:iib, dead, 353 days
143.1
TCGA-FP-7998-01A
77 years, male, white, stage:iiic, alive, 678 days
142.1
TCGA-CD-8535-01A
59 years, male, asian, stage:iiia, alive, 390 days
139.7
TCGA-FP-8099-01A
79 years, male, white, stage:iia, alive, 519 days
139.2
TCGA-BR-8297-01A
58 years, male, white, stage:iiic, alive, 225 days
138.9
TCGA-BR-8080-01A
72 years, female, white, stage:iiic, dead, 292 days
137.7
TCGA-CD-A486-01A
68 years, male, asian, stage:iia, dead, 192 days
137.3
TCGA-BR-8678-01A
76 years, male, white, stage:ib, alive, 754 days
137.3
TCGA-BR-6565-01A
67 years, male, white, stage:iib, dead, 279 days
136.0
TCGA-D7-A747-01A
57 years, male, white, stage:iib, dead, 255 days
135.5
TCGA-BR-8366-01A
80 years, female, white, stage:iia, alive, 29 days
135.2
TCGA-BR-7957-01A
50 years, female, white, stage:iv, dead, 276 days
134.9
TCGA-CD-A4MG-01A
76 years, male, asian, stage:iia, dead, 200 days
133.7
TCGA-CG-4306-01A
90 years, male, stage:iv, dead, 31 days
132.3
TCGA-RD-A8N4-01A
58 years, female, white, stage:iiia, alive, 2171 days
132.1
TCGA-CG-5724-01A
59 years, male, stage:iv, dead, 366 days
132.1
TCGA-VQ-A8DV-01A
48 years, male, white, stage:ib, dead, 403 days
132.0
TCGA-BR-8364-01A
42 years, female, white, stage:iiic, alive, 675 days
131.7
TCGA-BR-8058-01A
53 years, female, white, stage:iiib, alive, 1133 days
131.3
TCGA-CG-4305-01A
69 years, male, stage:ii, alive, 485 days
129.6
TCGA-BR-6564-01A
46 years, female, white, stage:iiia, dead, 794 days
128.9
TCGA-HU-A4H5-01A
71 years, male, asian, stage:ib, alive, 724 days
128.2
TCGA-BR-8682-01A
52 years, male, asian, stage:iib, alive, 991 days
127.7
TCGA-BR-8381-01A
51 years, male, white, stage:iib, alive, 224 days
127.6
TCGA-CG-4441-01A
83 years, male, stage:iiia, dead, 426 days
127.5
TCGA-B7-A5TN-01A
60 years, male, white, stage:iib, alive, 287 days
126.6
TCGA-BR-8382-01A
67 years, female, white, stage:iiic, dead, 762 days
126.4
TCGA-BR-6801-01A
70 years, male, white, stage:iia, alive, 1223 days
125.6
TCGA-BR-8291-01A
61 years, male, white, stage:iib, dead, 607 days
125.0
TCGA-D7-6525-01A
58 years, male, white, stage:iiia, dead, 406 days
122.3
TCGA-CD-5799-01A
45 years, male, asian, stage:ii, alive, 396 days
122.3
TCGA-BR-7958-01A
60 years, male, white, stage:iiib, alive, 899 days
121.7
TCGA-BR-7901-01A
74 years, male, white, stage:iib, dead, 105 days
121.7
TCGA-RD-A8N9-01A
63 years, female, asian, stage:ii, alive, 1083 days
120.4
TCGA-D7-6522-01A
58 years, male, white, stage:ib, alive, 566 days
119.1
TCGA-D7-8570-01A
44 years, male, white, stage:iiib, alive, 752 days
118.4
TCGA-CD-5813-01A
60 years, male, asian, stage:ii, dead, 377 days
117.4
TCGA-VQ-A91K-01A
69 years, male, white, stage:iiia, alive, 1862 days
117.3
TCGA-MX-A5UG-01A
78 years, male, asian, stage:iiia, dead, 113 days
116.4
TCGA-ZA-A8F6-01A
71 years, male, white, stage:ib, alive, 525 days
116.1
TCGA-HU-A4GY-01A
77 years, female, asian, stage:iiia, alive, 8 days
115.8
TCGA-D7-6521-01A
65 years, male, white, alive, 564 days
115.3
TCGA-BR-8060-01A
75 years, female, white, stage:iib, dead, 348 days
114.4
TCGA-CD-5804-01A
90 years, male, asian, alive, 368 days
113.4
TCGA-BR-8591-01A
79 years, male, white, stage:iiic, alive, 856 days
113.1
TCGA-BR-4279-01A
44 years, male, white, stage:ii, dead, 291 days
112.6
TCGA-CD-8530-01A
52 years, male, asian, stage:ii, alive, 377 days
111.8
TCGA-VQ-A924-01A
69 years, male, stage:ii, dead, 1686 days
111.7
TCGA-HU-8610-01A
75 years, male, asian, stage:ia, alive, 23 days
111.5
TCGA-BR-6803-01A
54 years, female, white, stage:iia, alive, 949 days
108.0
TCGA-EQ-8122-01A
72 years, female, white, stage:iib, dead, 243 days
107.8
TCGA-SW-A7EA-01A
61 years, female, white, stage:ib, alive, 579 days
106.5
TCGA-IP-7968-01A
74 years, male, white, stage:iiib, alive, 77 days
106.4
TCGA-HU-A4GQ-01A
71 years, male, asian, stage:iiic, dead, 3 days
106.2
TCGA-D7-6524-01A
53 years, male, white, stage:ii, alive, 543 days
105.6
TCGA-HU-8604-01A
82 years, female, asian, stage:iia, alive, 694 days
105.6
TCGA-BR-8371-01A
62 years, male, white, stage:iiib, dead, 359 days
105.0
TCGA-BR-4187-01A
56 years, male, white, dead, 141 days
104.0
TCGA-KB-A6F7-01A
54 years, female, stage:ib, alive, 1935 days
103.8
TCGA-BR-8284-01A
72 years, female, white, stage:iiic, dead, 245 days
103.7
TCGA-BR-8365-01A
70 years, female, white, stage:iia, dead, 533 days
103.0
TCGA-BR-8369-01A
76 years, female, white, stage:iiib, alive, 427 days
102.4
TCGA-F1-A72C-01A
68 years, male, asian, stage:iia, alive, 346 days
101.1
TCGA-CG-4437-01A
83 years, male, stage:ii, alive, 245 days
100.9
TCGA-MX-A5UJ-01A
86 years, female, white, stage:iiia, alive, 600 days
100.8
TCGA-R5-A805-01A
71 years, male, white, stage:iiib, dead, 281 days
99.3
TCGA-D7-6815-01A
70 years, female, white, stage:iib, alive, 486 days
98.7
TCGA-BR-8677-01A
74 years, female, white, stage:iiib, alive, 813 days
97.7
TCGA-BR-7707-01A
69 years, female, white, stage:ib, alive, 1090 days
96.8
TCGA-CD-8531-01A
66 years, female, asian, stage:iiia, alive, 383 days
95.0
TCGA-VQ-A91Q-01A
61 years, male, stage:iv, dead, 633 days
94.5
TCGA-BR-6452-01A
78 years, female, white, stage:iia, alive, 1055 days
94.4
TCGA-BR-8373-01A
65 years, female, white, stage:iiia, alive, 450 days
94.4
TCGA-VQ-A8PO-01A
74 years, male, white, stage:iib, dead, 282 days
93.0
TCGA-VQ-A8PE-01A
78 years, male, white, stage:iiib, dead, 675 days
92.5
TCGA-CG-4443-01A
68 years, male, stage:ia, alive, 912 days
91.3
TCGA-FP-7829-01A
69 years, male, white, stage:iib, alive, 594 days
89.8
TCGA-BR-A4J7-01A
49 years, male, asian, stage:iib, alive, 989 days
89.1
TCGA-CD-A487-01A
51 years, male, asian, stage:iib, alive, 374 days
86.2
TCGA-BR-8289-01A
57 years, male, white, stage:iv, dead, 81 days
85.2
TCGA-CG-5721-01A
58 years, male, stage:iv, alive, 183 days
83.2
TCGA-CG-5718-01A
78 years, female, stage:ii, dead, 1095 days
83.2
TCGA-VQ-AA6J-01A
75 years, male, black or african american, stage:iiib, alive, 838 days
82.9
TCGA-FP-8631-01A
68 years, male, white, stage:iiia, alive, 17 days
82.3
TCGA-BR-6802-01A
65 years, male, white, stage:iiia, alive, 940 days
81.1
TCGA-BR-A4J4-01A
39 years, male, asian, stage:iiib, alive, 16 days
80.7
TCGA-HU-A4G2-01A
46 years, male, asian, stage:iib, alive, 739 days
80.3
TCGA-RD-A8N6-01A
78 years, female, white, stage:iiia, dead, 272 days
79.9
TCGA-VQ-A8PD-01A
69 years, male, white, stage:iiic, dead, 496 days
79.5
TCGA-HU-8608-01A
70 years, male, asian, stage:iiib, alive, 641 days
79.3
TCGA-BR-7716-01A
62 years, female, white, stage:iib, alive, 1210 days
79.3
TCGA-B7-5818-01A
62 years, male, white, stage:ib, alive, 356 days
77.9
TCGA-CG-4469-01A
70 years, male, stage:iv, dead, 215 days
77.8
TCGA-VQ-A8DU-01A
63 years, male, white, stage:iiia, dead, 166 days
77.7
TCGA-D7-6520-01A
53 years, male, white, stage:iiia, alive, 573 days
75.6
TCGA-RD-A8N1-01A
70 years, male, white, stage:iiib, alive, 3519 days
73.2
TCGA-D7-A6EX-01A
72 years, female, white, stage:iiia, alive, 86 days
73.1
TCGA-CG-4440-01A
68 years, female, stage:iv, dead, 122 days
73.0
TCGA-D7-8579-01A
66 years, female, white, stage:iib, alive, 636 days
72.5
TCGA-CG-5723-01A
83 years, male, stage:ii, alive, 3196 days
72.5
TCGA-BR-6707-01A
75 years, male, white, stage:iia, alive, 605 days
71.4
TCGA-BR-A44U-01A
70 years, male, white, stage:iiib, dead, 422 days
71.4
TCGA-BR-7196-01A
64 years, male, white, stage:iv, alive, 666 days
71.2
TCGA-VQ-A8PK-01A
58 years, male, white, stage:iiib, dead, 543 days
70.5
TCGA-CG-4444-01A
76 years, male, stage:iiia, alive, 1431 days
69.7
TCGA-CD-8524-01A
61 years, female, asian, stage:ii, alive, 388 days
69.0
TCGA-VQ-A92D-01A
67 years, male, white, stage:ib, alive, 2032 days
68.8
TCGA-IN-A6RS-01A
76 years, male, white, stage:ia, alive, 383 days
66.7
TCGA-D7-A6EY-01A
72 years, female, white, stage:iiib, dead, 348 days
66.6
TCGA-CD-8525-01A
82 years, female, asian, stage:iiia, alive, 383 days
66.0
TCGA-IN-8663-01A
68 years, male, white, stage:iib, dead, 103 days
65.2
TCGA-F1-6177-01A
90 years, male, black or african american, stage:i, dead, 200 days
63.4
TCGA-CG-4477-01A
58 years, female, stage:ib, alive, 942 days
62.9
TCGA-D7-6526-01A
67 years, female, white, stage:iiia, alive, 523 days
62.8
TCGA-BR-A44T-01A
53 years, female, white, stage:iia, alive, 1038 days
62.2
TCGA-CG-4438-01A
56 years, male, stage:iv, alive, 1645 days
61.9
TCGA-F1-A448-01A
70 years, male, white, stage:iiib, alive, 647 days
61.6
TCGA-BR-8367-01A
56 years, male, white, stage:iiib, dead, 801 days
61.0
TCGA-VQ-A94R-01A
63 years, male, white, dead, 1294 days
60.8
TCGA-HJ-7597-01A
71 years, female, white, stage:ib, dead, 805 days
60.3
TCGA-CD-8526-01A
73 years, female, asian, stage:iiia, alive, 381 days
59.1
TCGA-BR-4253-01A
80 years, female, white, stage:iiia, dead, 124 days
57.3
TCGA-HU-A4H3-01A
56 years, female, asian, stage:iiic, alive, 882 days
57.2
TCGA-BR-A4J8-01A
71 years, female, white, stage:iiib, alive, 411 days
57.1
TCGA-BR-7717-01A
63 years, male, white, stage:iv, dead, 552 days
56.7
TCGA-D7-6528-01A
70 years, female, white, stage:ib, alive, 463 days
56.6
TCGA-VQ-A8P3-01A
72 years, male, white, stage:iiia, alive, 1132 days
56.5
TCGA-D7-A6F0-01A
79 years, female, white, stage:ib, alive, 678 days
55.6
TCGA-BR-6455-01A
59 years, male, white, stage:iib, dead, 422 days
54.6
TCGA-FP-7916-01A
78 years, male, asian, stage:iiic, dead, 428 days
53.1
TCGA-BR-4267-01A
51 years, male, white, stage:ib, dead, 188 days
53.0
TCGA-VQ-A91Z-01A
67 years, female, white, stage:iiia, alive, 1690 days
52.8
TCGA-BR-8487-01A
64 years, female, white, stage:iia, alive, 34 days
52.7
TCGA-HU-A4GU-01A
74 years, male, asian, stage:iib, alive, 200 days
52.5
TCGA-VQ-AA6D-01A
52 years, female, stage:iiia, alive, 521 days
50.9
TCGA-BR-A4CS-01A
77 years, male, white, stage:iiic, dead, 45 days
50.5
TCGA-HF-7134-01A
male, stage:ia, alive, 1588 days
50.2
TCGA-F1-6875-01A
80 years, male, black or african american, stage:ia, dead, 2197 days
49.8
TCGA-BR-7197-01A
69 years, male, white, stage:ii, alive, 280 days
49.5
TCGA-D7-6519-01A
64 years, female, white, alive, 625 days
49.3
TCGA-D7-A4YU-01A
73 years, male, white, stage:iiib, alive, 500 days
49.3
TCGA-HF-7132-01A
male, stage:ii, alive, 2351 days
48.5
TCGA-BR-8690-01A
54 years, female, white, stage:iiib, alive, 325 days
47.4
TCGA-D7-6822-01A
77 years, male, white, stage:ib, alive, 375 days
47.0
TCGA-BR-7704-01A
69 years, female, white, stage:ii, alive, 1072 days
46.9
TCGA-VQ-A8PM-01A
56 years, male, white, stage:iv, dead, 57 days
46.9
TCGA-BR-8296-01A
58 years, female, white, stage:iiic, dead, 474 days
46.5
TCGA-BR-8686-01A
69 years, male, asian, stage:iiib, dead, 635 days
46.1
TCGA-HU-A4HD-01A
73 years, male, asian, stage:iiia, alive, 1016 days
45.6
TCGA-VQ-AA6K-01A
60 years, male, white, stage:iiic, dead, 378 days
45.4
TCGA-IN-8462-01A
80 years, male, white, stage:iib, alive, 572 days
44.7
TCGA-BR-8361-01A
71 years, female, white, stage:iiic, alive, 946 days
44.6
TCGA-MX-A666-01A
61 years, male, white, stage:iia, alive, 427 days
43.6
TCGA-VQ-A8PF-01A
77 years, male, stage:iiib, dead, 76 days
43.6
TCGA-BR-4191-01A
72 years, male, white, dead, 558 days
43.4
TCGA-KB-A93J-01A
78 years, male, white, stage:ii, alive, 1124 days
42.6
TCGA-BR-8486-01A
90 years, female, white, stage:ia, alive, 615 days
42.4
TCGA-VQ-A94T-01A
73 years, male, stage:iiib, dead, 342 days
42.3
TCGA-BR-A4PF-01A
72 years, male, white, stage:iiib, alive, 35 days
42.3
TCGA-RD-A7BS-01A
46 years, male, white, stage:iiia, dead, 336 days
41.3
TCGA-HU-A4GC-01A
74 years, male, asian, stage:iiib, alive, 99 days
40.2
TCGA-IN-7806-01A
50 years, male, white, stage:iib, alive, 1106 days
39.4
TCGA-CG-4460-01A
66 years, female, stage:iv, dead, 669 days
38.8
TCGA-VQ-A8E7-01B
59 years, male, white, stage:iv, alive, 1138 days
38.1
TCGA-VQ-A927-01A
81 years, male, white, stage:iiib, dead, 200 days
38.1
TCGA-D7-A6EV-01A
71 years, female, white, stage:iib, alive, 342 days
38.0
TCGA-CD-8527-01A
72 years, female, asian, stage:ii, dead, 218 days
37.8
TCGA-CG-5725-01A
72 years, male, stage:ib, dead, 457 days
36.9
TCGA-VQ-A8E0-01A
68 years, male, black or african american, stage:iiia, dead, 562 days
36.9
TCGA-VQ-A8DZ-01A
70 years, male, black or african american, stage:iv, dead, 396 days
36.2
TCGA-VQ-A94U-01A
71 years, male, white, stage:iib, alive, 819 days
35.5
TCGA-CD-A48A-01A
57 years, male, asian, stage:iia, alive, 378 days
35.2
TCGA-IN-A7NU-01A
69 years, male, white, stage:iiib, alive, 356 days
35.0
TCGA-D7-8576-01A
54 years, female, white, stage:iiib, dead, 446 days
35.0
TCGA-HU-A4GF-01A
69 years, male, asian, stage:iia, alive, 785 days
34.9
TCGA-D7-5578-01A
80 years, male, white, stage:iiia, alive, 385 days
34.6
TCGA-CD-8534-01A
41 years, male, asian, stage:ii, alive, 367 days
34.1
TCGA-D7-A6F2-01A
62 years, male, white, stage:ib, alive, 476 days
33.5
TCGA-VQ-A91U-01A
78 years, male, asian, stage:iiia, dead, 52 days
33.5
TCGA-HU-A4G8-01A
71 years, female, asian, stage:iib, alive, 690 days
33.5
TCGA-HU-A4HB-01A
68 years, male, asian, stage:iib, dead, 477 days
33.3
TCGA-BR-8687-01A
67 years, female, white, stage:iiic, dead, 250 days
33.1
TCGA-D7-8574-01A
72 years, male, white, stage:iiia, alive, 523 days
33.1
TCGA-BR-8077-01A
58 years, female, white, stage:iiib, alive, 21 days
33.0
TCGA-BR-8484-01A
61 years, male, white, stage:iiia, dead, 766 days
32.7
TCGA-VQ-AA6F-01A
58 years, male, white, stage:iib, alive, 1646 days
32.6
TCGA-BR-8483-01A
59 years, male, white, stage:iiia, alive, 164 days
32.5
TCGA-CD-5800-01A
female, asian, stage:ii, alive, 400 days
32.1
TCGA-B7-A5TJ-01A
74 years, male, white, stage:iib, alive, 335 days
30.9
TCGA-BR-6563-01A
60 years, male, white, stage:iib, alive, 679 days
30.7
TCGA-3M-AB46-01A
male, white, stage:ib, alive, 1765 days
29.9
TCGA-RD-A7C1-01A
82 years, male, white, stage:ib, dead, 507 days
29.8
TCGA-CD-8533-01A
48 years, male, asian, stage:ii, alive, 468 days
29.7
TCGA-BR-8680-01A
45 years, male, asian, stage:iv, alive, 972 days
29.2
TCGA-VQ-A8PJ-01A
53 years, male, stage:iv, dead, 82 days
28.2
TCGA-HF-7133-01A
female, stage:iv, alive, 1918 days
27.8
TCGA-HU-8249-01A
76 years, male, asian, stage:iiia, alive, 881 days
27.6
TCGA-BR-4280-01A
78 years, female, white, stage:iii, dead, 201 days
27.6
TCGA-CG-4436-01A
57 years, male, stage:ib, alive, 243 days
27.4
TCGA-D7-A4YX-01A
63 years, male, white, stage:iib, alive, 1108 days
27.4
TCGA-IN-AB1V-01A
63 years, male, white, stage:ia, alive, 479 days
27.0
TCGA-IN-A7NR-01A
64 years, female, white, stage:iv, alive, 198 days
26.9
TCGA-D7-5577-01A
53 years, female, white, stage:iiia, dead, 782 days
26.8
TCGA-R5-A7ZF-01A
65 years, female, black or african american, stage:iv, dead, 259 days
25.5
TCGA-CD-8532-01A
52 years, male, asian, stage:ii, dead, 354 days
25.5
TCGA-VQ-A8E3-01A
79 years, male, white, stage:iia, dead, 661 days
25.4
TCGA-FP-7735-01A
77 years, male, black or african american, stage:ib, dead, 106 days
25.1
TCGA-VQ-AA69-01A
35 years, male, white, stage:iiia, alive, 864 days
24.9
TCGA-VQ-AA6G-01A
68 years, male, white, stage:iia, dead, 792 days
24.8
TCGA-VQ-A8P8-01A
72 years, female, black or african american, stage:iib, alive, 942 days
24.6
TCGA-BR-8372-01A
63 years, male, white, stage:iiic, alive, 951 days
24.3
TCGA-R5-A7O7-01A
52 years, male, white, stage:iv, alive, 1389 days
24.1
TCGA-CG-4466-01A
81 years, female, stage:ib, alive, 577 days
24.0
TCGA-VQ-A923-01A
90 years, male, white, stage:iiia, dead, 61 days
22.9
TCGA-HU-A4H4-01A
53 years, female, asian, stage:iib, alive, 725 days
22.8
TCGA-VQ-A91S-01A
63 years, male, black or african american, stage:iiib, alive, 1000 days
22.1
TCGA-D7-8573-01A
57 years, male, white, stage:iia, alive, 593 days
22.1
TCGA-R5-A7ZE-01B
66 years, female, white, stage:iiia, dead, 554 days
22.1
TCGA-RD-A8N0-01A
53 years, female, white, stage:iiib, alive, 1236 days
21.7
TCGA-D7-6527-01A
62 years, male, white, stage:ii, dead, 312 days
21.7
TCGA-CD-A4MH-01A
86 years, female, asian, stage:iia, alive, 371 days
20.8
TCGA-VQ-A8PQ-01A
50 years, female, white, stage:iv, dead, 476 days
20.4
TCGA-CD-5801-01A
male, asian, stage:iiia, dead, 401 days
20.4
TCGA-BR-7722-01A
62 years, male, white, stage:iib, dead, 466 days
20.3
TCGA-BR-8286-01A
49 years, male, white, stage:ii, alive, 895 days
20.1
TCGA-BR-6453-01A
54 years, male, white, stage:iia, alive, 485 days
19.4
TCGA-BR-A4QL-01A
75 years, female, white, stage:iiib, dead, 491 days
19.3
TCGA-VQ-A8P2-01A
68 years, male, white, stage:iiia, alive, 1160 days
18.7
TCGA-VQ-A925-01A
66 years, male, white, stage:iiia, dead, 138 days
18.6
TCGA-CG-5720-01A
71 years, male, stage:ib, dead, 30 days
18.4
TCGA-CG-5717-01A
58 years, male, stage:ii, dead, 212 days
18.3
TCGA-VQ-AA6A-01A
56 years, male, white, stage:iiic, alive, 1184 days
18.1
TCGA-HF-A5NB-01A
75 years, female, stage:iiic, alive, 928 days
17.2
TCGA-BR-A4J6-01A
69 years, female, white, stage:iia, alive, 20 days
16.7
TCGA-VQ-A8PU-01A
72 years, female, white, stage:iiia, dead, 832 days
16.5
TCGA-FP-A8CX-01A
60 years, male, white, stage:iiic, alive, 7 days
16.4
TCGA-D7-A4Z0-01A
60 years, female, white, stage:iib, alive, 449 days
16.2
TCGA-VQ-A8PC-01A
65 years, male, white, stage:iiia, dead, 1407 days
15.8
TCGA-CG-5722-01A
67 years, female, stage:iv, alive, 30 days
15.2
TCGA-BR-8368-01A
84 years, female, white, stage:ib, alive, 131 days
15.1
TCGA-D7-8575-01A
75 years, male, white, stage:iiia, dead, 554 days
14.6
TCGA-HU-A4GJ-01A
60 years, female, asian, stage:iiic, alive, 650 days
14.5
TCGA-HU-A4GT-01A
71 years, female, asian, stage:iia, alive, 198 days
14.5
TCGA-HU-A4H2-01A
58 years, female, asian, stage:iiib, alive, 394 days
14.5
TCGA-IN-A6RL-01A
84 years, male, white, dead, 406 days
14.5
TCGA-HU-A4GX-01A
70 years, female, asian, stage:iiic, alive, 616 days
14.2
TCGA-CG-5734-01A
68 years, male, stage:iiia, dead, 243 days
14.0
TCGA-R5-A7ZR-01A
70 years, female, black or african american, stage:iii, dead, 185 days
13.7
TCGA-IN-A6RN-01A
72 years, female, white, stage:iia, alive, 594 days
13.1
TCGA-HU-A4G3-01A
54 years, male, asian, stage:iib, alive, 170 days
12.2
TCGA-VQ-AA68-01A
52 years, female, white, stage:iiic, alive, 1328 days
11.6
TCGA-FP-8211-01A
62 years, male, white, stage:iib, alive, 413 days
11.6
TCGA-BR-6710-01A
41 years, male, white, stage:ib, alive, 273 days
10.9
TCGA-IN-AB1X-01A
78 years, female, white, stage:iia, alive, 411 days
10.4
TCGA-HU-8238-01A
56 years, male, asian, alive, 46 days
9.7
TCGA-HU-A4H0-01A
72 years, male, asian, stage:iiic, alive, 64 days
9.6
TCGA-RD-A8MV-01A
56 years, male, white, stage:iiib, alive, 3720 days
9.4
TCGA-BR-8676-01A
59 years, male, white, stage:iiib, alive, 229 days
9.3
TCGA-IN-A6RI-01A
45 years, male, white, stage:i, alive, 559 days
9.2
TCGA-CG-5732-01A
66 years, male, stage:iv, dead, 2100 days
9.1
TCGA-HU-A4H6-01A
72 years, female, asian, stage:iiia, alive, 644 days
9.0
TCGA-HU-A4GD-01A
56 years, male, asian, stage:iib, alive, 692 days
8.8
TCGA-VQ-A8PH-01A
62 years, male, white, stage:iiib, dead, 389 days
8.3
TCGA-FP-A9TM-01A
77 years, male, white, alive, 189 days
8.1
TCGA-HU-A4GP-01A
62 years, female, asian, stage:iia, alive, 273 days
7.8
TCGA-IN-A6RR-01A
84 years, male, white, dead, 205 days
7.6
TCGA-R5-A7ZI-01A
44 years, female, white, stage:iv, alive, 2267 days
6.6
TCGA-VQ-A91E-01A
67 years, female, white, stage:iiib, alive, 664 days
6.5
TCGA-KB-A93H-01A
79 years, female, asian, stage:iib, alive, 1145 days
5.8
TCGA-HU-A4H8-01A
77 years, male, asian, stage:ib, alive, 428 days
5.2
TCGA-IN-A6RJ-01A
64 years, male, white, stage:ia, alive, 379 days
5.1
TCGA-D7-A74A-01A
61 years, female, white, stage:iiia, alive, 607 days
5.1
TCGA-VQ-A91V-01A
58 years, male, stage:iiia, alive, 1297 days
5.0
TCGA-HU-A4GH-01A
75 years, male, asian, stage:ia, alive, 358 days
4.9
TCGA-RD-A7BT-01A
66 years, male, native hawaiian or other pacific islander, stage:iv, dead, 262 days
4.7
TCGA-VQ-A91N-01A
59 years, female, stage:iv, dead, 570 days
4.5
TCGA-VQ-A8PX-01A
51 years, male, stage:ia, alive, 1964 days
4.5
TCGA-IN-7808-01A
59 years, male, white, dead, 105 days
4.3
TCGA-BR-8589-01A
56 years, male, white, stage:iiib, alive, 825 days
3.9
TCGA-HU-8244-01A
77 years, female, asian, stage:ia, alive, 742 days
2.8
TCGA-VQ-A8DT-01A
43 years, male, stage:iiib, alive, 1484 days
2.5
TCGA-CG-5726-01A
73 years, male, stage:ia, dead, 881 days
2.3
TCGA-HU-A4G9-01A
67 years, female, asian, stage:ia, alive, 736 days
2.2
TCGA-VQ-A91X-01A
74 years, male, white, stage:iiib, dead, 289 days
1.4
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STOMACH CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high. This score is based on the staining intensity and fraction of stained cells.
The Human Protein Atlas project is funded
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